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The interesting thing, according to my optometrist, is that prism lenses may not actually be directly fixing anything related to the flicker. For example, the prism lenses are be helping w/ flicker, but that could simply be because my eyes are less strained overall and can more easily deal w/ flicker. This has definitely lined up with my experience - I've had the double vision come back after 4-6 hours of screen time, which makes me think the glasses didn't directly solve the issue.
I think this is actually good news, because it means we can try to find solutions for the underlying problem (For me, it's BVD), and still see positive results with flicker sensitivity.
I'm sorry to hear that, those symptoms sound rough to deal with. Have you seen an ophthalmologist?