Essentially yes. 'LodePNG' turns each .png frame into a big blob of colour values. I then compare each value of one frame, with the next and record any values which dither. Slightly worryingly, each pixel has four colour values, which I presume are RGBA, A being Alpha (transparency). This is a worry as the Alpha ranges between 0 and 2, but really it should always be zero. So potentially its not entirely giving me the right colour values.
The capture card software can output .tga, which I think will be better but i'll need to sort out decoding those.